Researcher Database

TOHSATO Yukako

Department / Course College of Information Science and Engineering Department of Information Science and Engineering

Title / Position Professor

Papers
1.	2023/12/28	Segmentation of mouse brain slices with unsupervised domain adaptation considering cross-sectional locations │ IPSJ Transactions on Bioinformatics │ (Co-authored)
2.	2023/12/19	Large-scale image processing and three-dimensional reconstruction of mouse brains with neurogenic-tagged neurons │ Proceedings of the 13th International Conference on Biomedical Engineering and Technology (ICBET 2023) │ ,pp.1-7 (Co-authored)
3.	2023/04/03	Metabolic network analysis by time-series causal inference using the multi-dimensional space of prediction errors │ IPSJ Transactions on Bioinformatics │ 16,pp.13-19 (Co-authored)
4.	2023/02/17	Gene deletion algorithms for minimum reaction network design by mixed-integer linear programming for metabolite production in constraint-based models: gDel_minRN │ Journal of Computational Biology │ 30 (5),pp.553-568 (Co-authored)
5.	2022/09/09	Phenotype anomaly detection for biological dynamics data using a deep generative model │ The 31st International Conference on Artificial Neural Networks (ICANN 2022), Lecture Notes in Computer Science │ 13530,pp.432-444 (Co-authored)
6.	2022/09/07	Unsupervised domain adaptation using temporal association for segmentation and its application to C. elegans time-lapse images │ he 31st International Conference on Artificial Neural Networks (ICANN 2022) │ 13531,pp.469-481 (Co-authored)
7.	2021/05/25	NeuroGT: a brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons │ Cell Reports Methods │ 1 (3),pp.100012 (Co-authored)
8.	2021/05/16	Analyzing phenotype microarray data for Escherichia coli using an infinite relational model │ Proceedings of the 2020 IEEE 8th International Conference on Bioinformatics and Computational Biology (ICBCB 2020) │ ,pp.125-129 (Co-authored)
9.	2021/05/16	Phenotype anomaly detection in early C. elegans embryos by variational auto-encoder │ Proceedings of the 2020 IEEE 8th International Conference on Bioinformatics and Computational Biology (ICBCB 2020) │ ,pp.1-5 (Co-authored)
10.	2020/09	Temporal anomaly detection by deep generative models │ Proceedings of the 29th International Conference on Artificial Neural Networks (ICANN 2020) │ 12396,pp.553-564 (Co-authored)
11.	2020/08/12	BD5: An open HDF5-based data format to represent quantitative biological dynamics data │ PLOS ONE │ 15 (8),pp.e0237468 (Co-authored)
12.	2020/05/16	Analyzing phenotype microarray data for Escherichia coli using an infinite relational model │ Proceedings of the 2021 IEEE the 9th International Conference on Bioinformatics and Computational Biology (ICBCB 2021) │ 125 (129) (Co-authored)
13.	2019/07	Analysis of time series anomalies using causal InfoGAN and its application to biological data │ 1074,pp.609-617 (Co-authored)
14.	2019/07	Characterizing phenotype abnormality by variational auto encoder │ roceedings of the 15th International Conference and Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD 2019) │ 1074,pp.618-626 (Co-authored)
15.	2017/05	Phenotype analysis method for identification of gene functions involved in asymmetric division of Caenorhabditis elegans │ Journal of Computational Biology │ 25 (5),pp.436-446 (Co-authored)
16.	2016/11	Nuclear detection in 4D microscope images of developing embryo using enhanced probability map of top-ranked intensity-ordered descriptors │ IPSJ Transactions on Computer Vision and Application │ 8 (8) (Co-authored)
17.	2016/06	SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena │ Bioinformatics │ 32 (22),pp.3471-3479 (Co-authored)
18.	2015/11	Investigation of glycan evolution based on a comprehensive analysis of glycosyltransferases using phylogenetic profiling │ Biophysics and Physicobiology │ 12,pp.57-68 (Co-authored)
19.	2015/04	Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data │ Bioinformatics │ 31 (7),pp.1044-1052 (Co-authored)
20.	2015/01	GenoBase: Comprehensive resource database of Escherichia coli K-12 │ Nucleic Acids Research │ 43(Database issue),pp.D606-D617 (Co-authored)
21.	2013/04	Biochemical studies on sphingolipids of Artemia franciscana: complex neutral glycosphingolipids │ Glycoconjugate Journal │ 30 (3),pp.257-268 (Co-authored)
22.	2013/04	Parameter optimization and sensitivity analysis for large kinetic models using a real-coded genetic algorithm │ Genes (Suppl. for GIW 2012) │ 518 (1),pp.84-90 (Co-authored)
23.	2013/02	ECOH: An Enzyme Commission number predictor using mutual information and a support vector machine │ Bioinformatics │ 29 (3),pp.365-372 (Co-authored)
24.	2012/08	Comparative proteomic analysis reveals differentially expressed proteins in Caenorhabditis elegans pgl-1 mutants grown at 20°C and 25°C │ Journal of Proteomics │ 75 (15),pp.4792-4801 (Co-authored)
25.	2012/08	Giochemical studies on sphingolipids of Artemia franciscana: complex neutral glycosphingolipids │ Glycoconjugate Journal │ (Co-authored)
26.	2012/08	Intrinsically disordered proteins in Human mitochondria │ Genes to Cells │ 17 (10),pp.817-825 (Co-authored)
27.	2010/09	Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli │ Journal Bioinformatics and Computational Biology (Suppl. for GIW 2010) │ 8 (1),pp.1-17 (Co-authored)
28.	2009/03	Reaction similarities focusing substructure changes of chemical compounds and metabolic pathway alignments │ IPSJ Transactions on Bioinformatics │ 2,pp.15-24 (Co-authored)
29.	2008/12/01	Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology │ Genome Informatics (GIW 2008) │ ,pp.42-5201 (Co-authored)
30.	2007/07	Metabolic pathway alignment based on similarity between chemical structures │ IPSJ Transactions on Bioinformatics │ 48 (SIG17 (TBIO3)),pp.9-18 (Co-authored)
31.	2006/11	A method for species comparison of metabolic networks using reaction profile │ IPSJ Transactions on Bioinformatics │ 47 (SIG17 (TOM1)),pp.42-47 (Sole-authored)
32.	2005/06	An OGSA-based integration of life scientific resources for drug discovery │ Methods of Information in Medicine │ 44 (2),pp.257-261 (Co-authored)
33.	2005/02	Heterogeneous database federation using grid technology for drug discovery process, grid computing in life science │ Lecture Notes in Bioinformatics │ 3370,pp.43-52 (Co-authored)
34.	2004/07	Development of a database system for drug discovery by employing grid technology │ Proceedings of the 7th International Conference on High Performance Computing and Grid in Asia Pacific Region (HPCAsia2004), IEEE CS Press │ ,pp.365-369 (Co-authored)
35.	2004/05/31	Heterogeneous database Federation using grid technology for drug discovery process │ Proceedings of the First International Workshop on Life Science Grid (LSGRID2004) │ ,pp.53-62 (Co-authored)
36.	2003/07	An Application of a Pathway Alignment Method to the Analysis of Metabolic Pathways │ Research Communications in Biochemistry, Cell and Molecular Biology │ 5 (3 & 4),pp.179-191 (Co-authored)
37.	2003/03/26	A Clustering Method for Comparative Analysis between Genomes and Pathways │ Proceedings of the 8th International Conference on Database Systems for Advanced Applications (DASFAA 2003) │ ,pp.327-334 (Co-authored)
38.	2000/08/19	A Multiple Alignment Algorithm to Metabolic Pathway Analysis using Enzyme Hierarchy │ Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology (ISMB 2000) │ ,pp.376-383 (Co-authored)