Researcher Database

FUKAO YOICHIRO

Department / Course College of Life Sciences Department of Bioinformatics

Title / Position Professor

Papers
1.	2022/04/27	The endoplasmic reticulum membrane-bending protein RETICULON facilitates chloroplast relocation movement in Marchantia polymorpha │ Plant journal │ 111 (1),pp.205-216 (Co-authored)
2.	2022/02/28	Sphingolipids with 2-hydroxy fatty acids aid in plasma membrane nanodomain organization and oxidative burst │ Plant Physuiology │ 189 (2),pp.839-857 (Co-authored)
3.	2022/01/28	The TGN/EE SNARE protein SYP61 and the ubiquitin ligase ATL31 cooperatively regulate plant responses to carbon/nitrogen conditions in Arabidopsis │ Plant Cell │ 34 (4),pp.1354-1374 (Co-authored)
4.	2021/05/18	HBD1 protein with a tandem repeat of two HMG box domains is a DNA clip to organize chloroplast nucleoids in Chlamydomonas reinhardtii │ Proc. Natl. Acad. Sci. USA │ 118 (20),pp.e2021053118 (Co-authored)
5.	2021/04/17	Transport-coupled ubiquitination of the borate transporter BOR1 for its boron-dependent degradation │ Plant Cell │ 33 (2),pp.420-438 (Co-authored)
6.	2020/10/01	Manganese Treatment Alleviates Zinc Deficiency Symptoms in Arabidopsis Seedlings. │ Plant Cell Physiol. │ 61 (10),pp.1711-1723 (Co-authored)
7.	2020/09/01	Generation of Arabidopsis lines with a red fluorescent marker for endoplasmic reticulum using a tail-anchored protein cytochrome b5-B. │ Plant Signal Behav. │ 15 (9),pp.e1790196 (Co-authored)
8.	2020/08/14	DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem │ Nature Commun. │ 11 (1),pp.4079 (Co-authored)
9.	2020/07/24	Cultivation of Spinach in Hot Seasons using a Micro-mist-based Temperature-control System. │ Scientia Horticulturae │ 273,pp.109603 (Co-authored)
10.	2020/05	Structural and functional relationships between plasmodesmata and plant endoplasmic reticulum–plasma membrane contact sites consisting of three synaptotagmins. │ New Phytol. │ 226 (3),pp.798-808 (Co-authored)
11.	2020/02	Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening. │ Plant Biotechnol. J. │ 18 (2),pp.415-428 (Co-authored)
12.	2020/01	Polar recruitment of RLD by LAZY1-like protein during gravity signaling in root branch angle control. │ Nature Commun. │ 11 (1),pp.76 (Co-authored)
13.	2019/03	Comprehensive nuclear proteome of Arabidopsis obtained by sequential extraction. │ Nucleus │ 10 (1),pp.81-92 (Co-authored)
14.	2019/03	Involvement of the membrane-localized ubiquitin ligase ATL8 in sugar starvation response in Arabidopsis. │ Plant Biotech. │ 36 (2),pp.107-112 (Co-authored)
15.	2019/01	ANGUSTIFOLIA Regulates Actin Filament Alignment for Nuclear Positioning in Arabidopsis Leaves │ Plant Physiol. │ 179 (1),pp.233-247 (Co-authored)
16.	2019/01	Arabidopsis Bax inhibitor-1 interacts with enzymes related to very-long-chain fatty acid synthesis. │ J. Plant Res. │ 132 (1),pp.131-143 (Co-authored)
17.	2018/12	Proteasomal degradation of BRAHMA promotes Boron tolerance in Arabidopsis. │ Nature Commun. │ 9,pp.5285 (Co-authored)
18.	2018/09	Stepwise evolution of supercomplex formation with photosystem I is required for stabilization of chloroplast NADH dehydrogenase-like complex: Lhca5-dependent supercomplex formation in Physcomitrella patens. │ Plant J. │ 96 (5),pp.937-948 (Co-authored)
19.	2018/05	AtPep3 is a hormone-like peptide that plays a role in the salinity stress tolerance of plants │ Proc. Natl. Acad. Sci. USA │ 115 (22),pp.5810-5815 (Co-authored)
20.	2018/04	Proteomic analysis of xylem vessel cell differentiation in VND7-inducible tobacco BY-2 cells by two-dimensional gel electrophoresis │ Plant Biotech. │ 35 (1),pp.31-37 (Co-authored)
21.	2017/10	BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis │ Proc. Natl. Acad. Sci. USA │ 114 (40),pp.E8528-E8536 (Co-authored)
22.	2017/09	Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage │ Nature Commun │ 8,pp.635 (Co-authored)
23.	2017/07	Chloroplastic ATP synthase builds up proton motive force for preventing reactive oxygen species production in photosystem I. │ Plant J. │ 91 (2),pp.306-324 (Co-authored)
24.	2017/05	Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana. │ Nucleus │ 8 (3),pp.301-311 (Co-authored)
25.	2016/11	The CERK1-associated kinase PBL27 mediates 1 chitin-triggered MAPK activation in Arabidopsis. │ EMBO J. │ 35 (22),pp.2468-2483 (Co-authored)
26.	2016/10	Grana-localized Proteins, RIQ1 and RIQ2, Affect the Dynamics of Light-harvesting Complex II and Grana Stacking in Arabidopsis. │ Plant Cell │ 28 (9),pp.2261-2275 (Co-authored)
27.	2016/09	CHLORORESPIRATORY REDUCTION 9 Is a Novel Factor Required for Formation of Subcomplex A of the Chloroplast NADH Dehydrogenase-like Complex. │ Plant Cell Physiol. │ 57 (10),pp.2122-2132 (Co-authored)
28.	2016/08	Plasma membrane microdomains are essential for OsRac1-OsRbohB/H-mediated immunity in rice. │ Plant Cell │ 28 (8),pp.1966-1983 (Co-authored)
29.	2016/06	Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.). │ J. Proteomics │ 143 (3),pp.254-264 (Co-authored)
30.	2016/04	TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. │ Plant Cell │ 28 (4),pp.930-948 (Co-authored)
31.	2016/03	Quantitative proteomics based reconstruction and identification of metabolic pathways and membrane transport proteins related to sugar accumulation in developing fruits of Pear (Pyrus communes). │ Plant Cell Physiol. │ 57 (3),pp.505-518 (Co-authored)
32.	2016/02	Phosphorylation of the C-terminus of RHD3 has a critical role in homotypic ER membrane fusion in Arabidopsis │ Plant Physiol. │ 170 (2),pp.867-880 (Co-authored)
33.	2016/01	Quantitative proteomic analysis of the response to zinc, magnesium, and calcium deficiency in specific cell types of Arabidopsis roots │ Proteomes │ 4 (1),pp.1-13 (Co-authored)
34.	2015/12	Proteomic analysis of lipid body from the alkenone-producing marine haptophyte alga Tisochrysis lutea. │ Proteomics │ ,pp.4145-4158 (Co-authored)
35.	2015/11	Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. │ Genome Biol Evol. │ 8 (1),pp.1-16 (Co-authored)
36.	2015/11	The Adaptor Complex AP-4 Regulates Vacuolar Protein Sorting at trans-Golgi Network by Interacting with VACUOLAR SORTING RECEPTOR 1. │ Plant Physiol. │ 170 (1),pp.211-219 (Co-authored)
37.	2015/10	Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zn deficiency in roots. │ Plant J. │ 84 (2),pp.323-334 (Co-authored)
38.	2015/09	miR-199a links MeCP2 with mTOR signaling and its dysregulation causes Rett syndrome phenotypes. │ Cell Rep. │ 12 (11),pp.1887-1901 (Co-authored)
39.	2015/09	Plastid Proteomic Analysis in Tomato Fruit Development. │ PLoS One │ 10 (9),pp.e0137266 (Co-authored)
40.	2015/08	Immature seed endosperm and embryo proteomics of the lotus (Nelumbo nucifera Gaertn.) by one-dimensional gel-based tandem mass spectrometry and a comparison with the mature endosperm proteome. │ Proteomes │ 3 (3),pp.184-235 (Co-authored)
41.	2015/08	Quantitative proteomics reveals role of sugar in decreasing photosynthetic activity due to Fe deficiency. │ Front. Plant Sci. │ 6,pp.592 (Co-authored)
42.	2015/06	Discordance between protein and transcript levels detected by selected reaction monitoring. │ Plant Signal Behav. │ 10 (5),pp.e1017697 (Sole-authored)
43.	2015/05	Unraveling the seed endosperm proteome of the lotus (Nelumbo nucifera Gaernt.) utilizing 1DE and 2DE separation in conjunction with tandem mass spectrometry. │ Proteomics │ 15 (10),pp.1717-1735 (Co-authored)
44.	2015/04	Quantitative proteomics of Arabidopsis shoot microsomal proteins reveals a cross-talk between excess zinc and iron deficiency. │ Proteomics │ 15 (7),pp.1196-1201 (Co-authored)
45.	2015/01	Arabidopsis dynamin-related proteins, DRP2A and DRP2B, function coordinately in post-Golgi trafficking. │ Biochem. Biophys. Res. Commun. │ 456 (1),pp.238-244 (Co-authored)
46.	2015/01	Correlation analysis of proteins responsive to Zn, Mn, or Fe deficiency in Arabidopsis roots based on iTRAQ analysis. │ Plant Cell Rep. │ 34 (1),pp.157-166 (Co-authored)
47.	2014/07	Cross-Linking Evidence for Multiple Interactions of the PsbP and PsbQ Proteins in a Higher Plant Photosystem II Supercomplex. │ J. Biol. Chem. │ 289 (29),pp.20150-20157 (Co-authored)
48.	2014/07	Proteomic analysis of 26S proteasome reveals direct interaction with transit peptides of plastid protein precursors for degradation. │ J. Proteome Res. │ 13 (7),pp.3223-3230 (Co-authored)
49.	2014/06	Ubiquitin-proteasome–mediated degradation of S-RNase in a solanaceous cross-compatibility reaction │ Plant J. │ 78 (6),pp.1014-1021 (Co-authored)
50.	2014/05	Phosphorylation of Arabidopsis Ubiquitin Ligase ATL31 Is Critical for Plant C/N-nutrient Response and Controls the Stability of 14-3-3 Proteins │ J. Biol. Chem. │ 289 (22),pp.15179-15193 (Co-authored)
51.	2014/05	The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis thaliana. │ Plant Cell │ 26 (5),pp.2143-2155 (Co-authored)
52.	2014/04	Characteristics of a root hair-less line of Arabidopsis thaliana under physiological stresses. │ J. Exp. Bot. │ 65 (6),pp.1497-1512 (Co-authored)
53.	2014/04	Interactomics of Qa-SNARE in Arabidopsis thaliana. │ Plant Cell Physiol. │ 55 (4),pp.781-789 (Co-authored)
54.	2014/02	The C/N regulator ATL31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SNARE SYP121 in Arabidopsis. │ Plant Physiol. │ 164 (2),pp.879-887 (Co-authored)
55.	2014/01	Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis thaliana. │ Plant Physiol. │ 164 (1),pp.105-118 (Co-authored)
56.	2013/12	MAIGO5 Functions in Protein Export from Golgi-Associated Endoplasmic Reticulum Exit Sites in Arabidopsis. │ Plant Cell │ 25 (11),pp.4658-4675 (Co-authored)
57.	2013/12	Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. │ Plant Physiol. │ 163 (4),pp.1804-1816 (Co-authored)
58.	2013/12	SUPPRESSOR OF LLP1 1-mediated C-terminal processing is critical for CLE19 peptide activity. │ Plant J. │ 76 (6),pp.970-981 (Co-authored)
59.	2013/11	INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics: Change of Guard, INPPO Update, and Upcoming Activities. │ Proteomics │ 13 (21),pp.3093-3100 (Co-authored)
60.	2013/11	Proteomics analysis reveals a highly heterogenous proteasome composition and the post-translational regulation of peptidase activity under pathogen signaling in plants. │ J. Proteome Res. │ 12 (11),pp.5084-5095 (Co-authored)
61.	2013/10	Studies on vacuolar membrane microdomains isolated from Arabidopsis suspension-cultured cells: Local distribution of vacuolar membrane proteins. │ Plant Cell Physiol. │ 54 (10),pp.1571-1584 (Co-authored)
62.	2013/10	Unraveling the iron deficiency responsive proteome in Arabidopsis shoot by iTRAQ-OFFGEL approach. │ Plant Signal Behav. │ 9 (1),pp.e26892 (Co-authored)
63.	2013/09	Myosin XI-i links the nuclear membrane to the cytoskeleton to control nuclear movement and shape in Arabidopsis thaliana. │ Curr. Biol. │ 23 (18),pp.1776-1781 (Co-authored)
64.	2013/08	Identification and dynamics of Arabidopsis AP-2 complex and its involvement in floral organ development. │ Plant Cell │ 25 (8),pp.2958-2969 (Co-authored)
65.	2013/06	The AP-1 μ adaptin is required for KNOLLE localization at the cell plate to mediate cytokinesis in Arabidopsis. │ Plant Cell Physiol. │ 54 (6),pp.838-847 (Co-authored)
66.	2013/05	Peptide separation methodologies for in-depth proteomics in Arabidopsis. │ Plant Cell Physiol. │ 54 (5),pp.808-815 (Co-authored)
67.	2013/05	Potential involvement of N-terminal acetylation in the quantitative regulation of the ε subunit of chloroplast ATP synthase under drought stress. │ Biosci. Biotechnol. Biochem. │ 77 (5),pp.998-1007 (Co-authored)
68.	2013/02	Proteomic Analysis Reveals that the Rab GTPase RabE1c is involved in the degradation of the peroxisomal protein receptor PEROXIN 7. │ J. Biol. Chem. │ 288 (8),pp.6014-6023 (Co-authored)
69.	2012/11	ERMO3/MVP1/GOLD36 is involved in a cell type-specific mechanism for maintaining ER morphology in Arabidopsis thaliana. │ PLoS One │ 7 (11),pp.e49103 (Co-authored)
70.	2012/09	SMALL ACIDIC PROTEIN 1 acts with RUB modification components, the COP9 signalosome and AXR1, to regulate growth and development of Arabidopsis thaliana. │ Plant Physiol. │ 160 (1),pp.93-105 (Co-authored)
71.	2012/07	The conserved His144 in the PsbP protein is important for the interaction between the PsbP N-terminus and the Cyt B559 subunit of photosystem II. │ J. Biol. Chem. │ 287 (31),pp.26377-26387 (Co-authored)
72.	2012/06	Regulation of ABCB1/PGP1-catalysed auxin transport by linker phosphorylation. │ EMBO J. │ 31 (13),pp.2965-2980 (Co-authored)
73.	2012/04	Protein-Protein Interactions in Plants. │ Plant Cell Physiol. │ 53 (4),pp.617-625 (Sole-authored)
74.	2012/01	Multi-step assembly of the chloroplast NADH dehydrogenase-like subcomplex A requires several nucleus-encoded proteins. │ Plant Cell │ 24 (1),pp.202-214 (Co-authored)
75.	2011/10	Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis. │ Plant J. │ 68 (1),pp.137-146 (Co-authored)
76.	2011/09	V-ATPase dysfunction under excess zinc inhibits Arabidopsis cell expansion. │ Plant Signal. Behav. │ 6 (9),pp.1253-1255 (Co-authored)
77.	2011/04	A chaperonin subunit with unique structures is essential for folding of a specific substrate. │ PLoS Biol. │ 9 (4),pp.e1001040 (Co-authored)
78.	2011/04	An srchomology 3 domain-like fold protein forms a ferredoxin-binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis. │ Plant Cell │ 23 (4),pp.1480-1493 (Co-authored)
79.	2011/04	iTRAQ analysis reveals mechanisms of growth defects due to excess zinc in Arabidopsis. │ Plant Physiol. │ 155 (4),pp.1893-1907 (Co-authored)
80.	2010/12	Identification of nuclear pore complex components in Arabidopsis thaliana. │ Plant Cell │ 22 (12),pp.4084-4097 (Co-authored)
81.	2010/09	Characterization of bacterial-type phosphoenolpyruvate carboxylase expressed in male gametophyte of higher plants. │ BMC Plant Biol. │ 14 (10),pp.200 (Co-authored)
82.	2010/01	The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. │ Plant J. │ 61 (2),pp.339-349 (Co-authored)
83.	2009/12	Identification of zinc-responsive proteins in the roots of Arabidopsis thaliana using a highly improved method of two-dimensional electrophoresis. │ Plant Cell Physiol. │ 50 (12),pp.2234-2239 (Co-authored)
84.	2009/12	Threonine at position 306 of the KAT1 potassium channel is essential for channel activity and is a target site for ABA-activated SnRK2/OST1/SnRK2.6 protein kinase. │ Biochem J. │ 424 (3),pp.439-448 (Co-authored)
85.	2009/11	Efficient operation of NAD(P)H dehydrogenase-dependent cyclic electron flow requires the supercomplex formation with photosystem I via minor LHCI in Arabidopsis. │ Plant Cell │ 21 (11),pp.3623-3640 (Co-authored)
86.	2009/07	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice. │ Plant Cell Physiol. │ 50 (7),pp.1191-1200 (Co-authored)
87.	2009/05	Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. │ J. Exp. Bot. │ 60 (11),pp.3067-3073 (Co-authored)
88.	2009/04	The putative RNA-processing protein, THO2, is a microtubule-associated protein in Tobacco. │ Plant Cell Physiol. │ 50 (4),pp.801-811 (Co-authored)
89.	2009/02	Alterations in detergent-resistant plasma membrane microdomains in Arabidopsis thaliana during cold acclimation. │ Plant Cell Physiol. │ 50 (2),pp.341-359 (Co-authored)
90.	2008/09	A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana. │ Plant J. │ 55 (5),pp.798-809 (Co-authored)
91.	2008/06	Antagonistic jacalin-related lectins regulate the size of ER body-type β-glucosidase complexes in Arabidopsis thaliana. │ Plant Cell Physiol. │ 49 (6),pp.969-980 (Co-authored)
92.	2007/12	Cytosolic HSP90 regulates the heat shock response that is responsible for heat acclimation in Arabidopsis thaliana. │ J. Biol. Chem. │ 282 (52),pp.37794-37804 (Co-authored)
93.	2006/12	MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana. │ Plant Cell │ 18 (12),pp.3535-3547 (Co-authored)
94.	2005/10	MDR-like ABC transporter AtPGP4 is involved in auxin-mediated lateral root and root hair development. │ FEBS Letter │ 579 (24),pp.5399-5406 (Co-authored)
95.	2004/06	NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body. │ Plant Cell │ 16 (6),pp.1536-1549 (Co-authored)
96.	2003/06	Novel glyoxysomal protein kinase, GPK1, identified by proteomic analysis of glyoxysomes in etiolated cotyledons of Arabidopsis thaliana. │ Plant Cell Physiol. │ 44 (10),pp.1002-1012 (Co-authored)
97.	2002/07	Proteomic analysis of leaf peroxisomal proteins in greening cotyledons of Arabidopsis thaliana. │ Plant Cell Physiol. │ 43 (7),pp.689-696 (Co-authored)
98.	2001/08	Developmental analysis of a putative ATP/ADP carrier protein localized on glyoxysomal membranes during the peroxisome transition in pumpkin cotyledons. │ Plant Cell Physiol. │ 42 (8),pp.835-841 (Co-authored)