研究者学術情報データベース

トガシユウイチ
冨樫祐一
TOGASHI YUICHI

所属生命科学部生命情報学科

職名教授

論文
1.	2022/08/23	Molecular dynamics analysis of biomolecular systems including nucleic acids │ Biophysics and Physicobiology │ 19,e190027 (共著)
2.	2022/04/08	Translational recoding by chemical modification of non-AUG start codon ribonucleotide bases │ Science Advances │ 8 (14),eabm8501 (共著)
3.	2022	Multiscale Modeling of Chromatin Considering the State and Shape of Molecules │ Lecture Notes in Mechanical Engineering │ ,171-175頁 (単著)
4.	2021/06	Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex │ PLoS Computational Biology │ 17 (6),e1009068 (共著)
5.	2021/01/11	Structural dynamics of DNA depending on methylation pattern │ Physical Review E │ 103 (1) (共著)
6.	2020/03	PHi-C: deciphering Hi-C data into polymer dynamics │ NAR Genomics and Bioinformatics │ 2 (2),lqaa020 (共著)
7.	2019/11/28	Histone Tail Dynamics in Partially Disassembled Nucleosomes During Chromatin Remodeling │ FRONTIERS IN MOLECULAR BIOSCIENCES │ 6,133 (共著)
8.	2019/09	Analyzing fluctuation properties in protein elastic networks with sequence specific and distance dependent interactions │ Biomolecules │ 9 (10),549 (共著)
9.	2019/02/21	Modeling of Nanomachine/Micromachine Crowds: Interplay between the Internal State and Surroundings │ JOURNAL OF PHYSICAL CHEMISTRY B │ 123 (7),1481-1490頁 (単著)
10.	2018/12/05	Coarse-Grained Protein Dynamics Studies Using Elastic Network Models │ INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES │ 19 (12),3899 (共著)
11.	2018/10/13	Designed Elastic Networks: Models of Complex Protein Machinery │ INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES │ 19 (10),3152 (共著)
12.	2018/09/18	Single-molecule diffusion-based estimation of ligand effects on G protein-coupled receptors. │ Science signaling │ 11 (548),eaao1917 (共著)
13.	2017/11	少数と個性―分子の数と生命らしさ │ 実験医学 │ 35 (19),3190-3196頁 (共著)
14.	2017/05	非一様な多機能触媒反応系における少数分子成分効果 │ 京都大学数理解析研究所講究録 │ 2028,120-133頁 (共著)
15.	2017/03	The 1-Particle-per-k-Nucleotides (1PkN) Elastic Network Model of DNA Dynamics with Sequence-Dependent Geometry │ FRONTIERS IN PHYSIOLOGY │ 8,103 (共著)
16.	2017	Bridging the dynamics and organization of chromatin domains by mathematical modeling │ NUCLEUS │ 8 (4),353-359頁 (共著)
17.	2017	VARYING THE RESOLUTION OF THE ROUSE MODEL ON TEMPORAL AND SPATIAL SCALES: APPLICATION TO MULTISCALE MODELING OF DNA DYNAMICS │ MULTISCALE MODELING&SIMULATION │ 15 (4),1672-1693頁 (共著)
18.	2016/11/29	書評 CELL BIOLOGY by the numbers │ 生物物理 │ 56 (6),352-352頁 (単著)
19.	2016/11	Non-RVD mutations that enhance the dynamics of the TAL repeat array along the superhelical axis improve TALEN genome editing efficacy │ SCIENTIFIC REPORTS │ 6,37887 (共著)
20.	2016/10	Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells │ PLOS COMPUTATIONAL BIOLOGY │ 12 (10),e1005136 (共著)
21.	2016/07/25	書評エントロピーからはじめる熱力学 │ 生物物理 │ 56 (4),246-246頁 (単著)
22.	2016/04/01	Screening for mechanical responses of proteins using coarse-grained elastic network models │ IEICE NONLINEAR THEORY AND ITS APPLICATIONS │ 7 (2),190-201頁 (単著)
23.	2016/03	An Analytical Framework for Studying Small-Number Effects in Catalytic Reaction Networks: A Probability Generating Function Approach to Chemical Master Equations │ FRONTIERS IN PHYSIOLOGY │ 7,89 (共著)
24.	2015/08	Integrin LFA-1 regulates cell adhesion via transient clutch formation │ BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS │ 464 (2),459-466頁 (共著)
25.	2015/03	DNA Structural Dynamics (Team 5) │ Dagstuhl Reports │ 4,191-194頁 (共著)
26.	2015/03	Spatiotemporal patterns enhanced by intra- and inter-molecular fluctuations in arrays of allosterically regulated enzymes │ NEW JOURNAL OF PHYSICS │ 17,033024 (共著)
27.	2015/03	Spying “Minorities” in the Cell │ Dagstuhl Reports │ 4,165-166頁 (単著)
28.	2015/02/05	領域12,領域11「N=1と∞の狭間の生命現象の物理」(2014年秋季大会シンポジウムの報告,学会報告) │ 日本物理學會誌 │ 70 (2),149-149頁 (単著)
29.	2014/02	Energetics of single active diffusion trajectories │ EPL │ 105 (3),30002 (共著)
30.	2014	少数分子反応系理論・少数性生物学 │ 生体の科学 │ 65,450-451頁 (単著)
31.	2012/11	Spontaneous Structural Changes in Actin Regulate G-F Transformation │ PLOS ONE │ 7 (11),e45864 (共著)
32.	2012/10	Complex Intramolecular Mechanics of G-actin - An Elastic Network Study │ PLOS ONE │ 7 (10),e45859 (共著)
33.	2012/05	生体分子機械の粗視化モデリング手法の検証 │ 第56回システム制御情報学会研究発表講演会講演論文集 │ ,T24-2 (共著)
34.	2012/02	Myosin-V as a Mechanical Sensor: An Elastic Network Study │ BIOPHYSICAL JOURNAL │ 102 (3),542-551頁 (共著)
35.	2011	A mesoscopic model for protein enzymatic dynamics in solution │ PHYSICAL CHEMISTRY CHEMICAL PHYSICS │ 13 (22),10527-10537頁 (共著)
36.	2011	Modeling bio-molecular machinery in the complex environment inside the cell │ Proceedings - 11th IEEE/IPSJ International Symposium on Applications and the Internet, SAINT 2011 │ ,266-266頁 (単著)
37.	2010/09/23	2004 生体分子機械の構造変化と非線形性(OS20. 細胞・生体分子の計算バイオメカニクス(1),オーガナイズドセッション講演) │ 計算力学講演会講演論文集 │ 2010 (23),7-9頁 (共著)
38.	2010/06	Nonlinearity of Mechanochemical Motions in Motor Proteins │ PLOS COMPUTATIONAL BIOLOGY │ 6 (6),e1000814 (共著)
39.	2010/01	Multiple Structural Forms of Actin in the Filamentous State │ BIOPHYSICAL JOURNAL │ 98 (3),154A-154A頁 (共著)
40.	2008/05	Mesoscale modeling of molecular machines: Cyclic dynamics and hydrodynamical fluctuations │ PHYSICAL REVIEW E │ 77 (5),050901 (共著)
41.	2008/03	タンパク分子機械の力学的特徴と設計原理―弾性ネットワークモデルによる試み │ 生物物理 │ 48 (2),114-118頁 (単著)
42.	2008	745 生体分子機械の力学的特徴 : 粗視化分子動力学計算による比較研究 │ 計算力学講演会講演論文集 │ (共著)
43.	2007/07	Molecular synchronization waves in arrays of allosterically regulated enzymes │ PHYSICAL REVIEW LETTERS │ 99 (4),048301 (共著)
44.	2007/05	Nonlinear relaxation dynamics in elastic networks and design principles of molecular machines │ PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA │ 104 (21),8697-8702頁 (共著)
45.	2007/01	Switching Dynamics in Reaction Networks Induced by Molecular Discreteness │ Journal of Physics: Condensed Matter │ 19 (6),065150 (共著)
46.	2005/02	Discreteness-induced Stochastic Steady State in Reaction Diffusion Systems: Self-consistent Analysis and Stochastic Simulations │ Physica D │ 205 (1-4),87-99頁 (共著)
47.	2004/08	Molecular discreteness in reaction-diffusion systems yields steady states not seen in the continuum limit │ PHYSICAL REVIEW E │ 70 (2),020901 (共著)
48.	2003/01	Alteration of chemical concentrations through discreteness-induced transitions in small autocatalytic systems │ JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN │ 72 (1),62-68頁 (共著)
49.	2002	画像検索サービス知的化の試み: TINAMI │ 人工知能学会全国大会論文集 │ ,212 (共著)
50.	2001/11/20	分子数の離散性が反応系に及ぼす効果(基研研究会「非平衡系の新局面-運動・機能・構造-」,研究会報告) │ 物性研究 │ 77 (2),342-343頁 (共著)
51.	2001/08/20	反応ネットワークにおける分子数の離散性効果(修士論文(2000年度)) │ 物性研究 │ 76 (5),702-702頁 (単著)
52.	2001/03	Transitions induced by the discreteness of molecules in a small autocatalytic system │ PHYSICAL REVIEW LETTERS │ 86 (11),2459-2462頁 (共著)